idpet.data package

Submodules

idpet.data.api_client module

class idpet.data.api_client.APIClient[source]

Bases: object

close_session()[source]

download_response_content(response, save_path)[source]

perform_get_request(url, headers=None)[source]

idpet.data.io_utils module

idpet.data.io_utils.extract_tar_gz(tar_gz_file, output_dir, new_name)[source]

idpet.data.io_utils.setup_data_dir(data_dir)[source]

idpet.data.topology module

Work with topologies of protein systems.

idpet.data.topology.get_ca_topology(sequence, bead_name='CA')[source]

input: amino acid sequence. output: a mdtraj topology with one bead per residue.

Return type:: Topology

idpet.data.topology.slice_traj_to_com(traj)[source]

Return type:: Trajectory

Module contents